PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G046700.1
Common NameB456_005G046700, LOC105796696
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 235aa    MW: 27327.5 Da    PI: 10.1347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G046700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-0883131154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+ +h ++Er RR++ +++++ L ++lP       +K++K +i++ A+  +++L
  Gorai.005G046700.1  83 RCLKHTMNERTRREKQKKCYFALYSMLPLG-----TKNDKNSIVQTATMRVREL 131
                         6789*************************6.....6777777777777666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-581125No hitNo description
SuperFamilySSF474599.01E-1181148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.14482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-683131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-886145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006788137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDELIKQLLG EHGTIWYETT PVLQPVRPSA FQPYPRTPRT EPWLEAAGCN NGVRSGNVNK  60
RMIEFLRKTN WVSVISKDKQ KQRCLKHTMN ERTRREKQKK CYFALYSMLP LGTKNDKNSI  120
VQTATMRVRE LEMEREELQR RNSELLVNLG GNANNEGAKI RARIDDPSYG IDYMLEVLKC  180
LKTLDSKPRM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481936.11e-174PREDICTED: transcription factor bHLH92-like
TrEMBLA0A0D2R9A11e-174A0A0D2R9A1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2444834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-27bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]